vWISE 2021 Lecture Notes, Presentations and Videos
This web page provides links to materials for the 2022 vWISE program. This information is intended for the students participating in the 2022 vWISE program. It is not intended for general public use and access is password protected. Access to these material is with the username/password students used to register on DSAP-vWISE The material on these pages is provided for educational purposes only. Unauthorized use of this material is prohibited. If you have comments or questions about the material please contact Sue Coletta, Waksman Institute, Rutgers University.
| Ch. | 2021 Lecture Topics Student Links |
Notes (.pdf) |
Figures (.pdf) |
Videos (.mp4) |
|---|---|---|---|---|
| 0 | Introduction and overview of project (video) | Ch0.pdf | ||
| 0 | Polymers and DNA Structure | Ch0.pdf | ||
| 1 | Vectors: Plasmids, Libraries, (Plasmid DNA preps will not be covered in vWISE) | Ch. 1 | Ch1.pdf | |
| 2 | PCR, Mapping the size of an insert (Not covered in vWISE) | Ch. 2 | Ch2.pdf | |
| 3 | Restriction enzymes,Mapping the size of an insert (Not covered in vWISE) | Ch. 3 | Ch3.pdf | |
| 4 | DNA Sequencing, | Ch. 4 | Ch4.pdf | |
| 5 | Logging onto DSAP, Sequence quality, cropping the ends | Ch. 5 | Ch5.pdf | |
| 6 | Editing the waveform | Ch. 6 | Ch6.pdf | |
| 7 | BLASTN (DNA vs DNA search) | Ch. 7 | Ch7.pdf | |
| 8 | BLASTX (Translated DNA vs Protein search) | Ch. 8 | Ch8.pdf | |
| 9 | Determining ORFs, BLASTP (Protein vs Protein search) | Ch. 9 | Ch9.pdf | |
| 10 | Literature Search | Ch. 10 | Ch10.pdf | |
| 11 | Compare Sizes of cDNA Insert (Not covered in vWISE) | Ch. 11 | Ch11.pdf | |
| 12 | Structural analysis on the Protein Data Bank (PDB) | Ch. 12 | Ch12.pdf | |
| 13 | Next Gen Sequencing and Searching the TSA Database | Ch. 13 | Ch13.pdf | |
| 14 | Investigating Protein Interactions | Ch. 14 | Ch14.pdf | |
| 15 | Investigating Protein Expression | Ch. 15 | Ch15.pdf | |
| 16 | Molecular Biology Experiments: What to do next | Ch. 16 | Ch16.pdf | |
| 17 | Preparing a Poster (Not covered in vWISE) | Ch17.pdf |
Parental Release Form (doc) (pdf)
Download FinchTV (external site) Download FinchTV (from WSSP site)
Download 4Peaks (Mac only)